Practice and theory of brain imaging

About
Calendar
Schedule
Staff
Week 1 session 1: Introduction and tools
Week 1 session 2: Files, Numpy, and notebook exercises
Week 2 session 1: Arrays, images and plotting
Week 2 session 2: Three dimensional arrays
Week 3 session 1: Command line, modules and functions; FMRI artifacts
Week 3 session 2: Modules, functions, Git, Github
Week 4 session 1: Indexing and four dimensions
Week 4 session 2: Github workflow; more on modules
Week 5 session 1: Github walkthrough; modules and testing
Week 5 session 2: The project; modules and testing
Week 6 session 1: DVARs, testing, voxel statistics
Week 6 session 2: Voxel statistics and the HRF
Week 7 session 1: Testing, regression
Week 7 session 2: Statistics, continued
Week 8 session 1: The General Linear Model, multiple voxels
Week 8 session 2: Whole image statistics; introduction to spatial processing

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Week 2 session 2: Three dimensional arrays

Recording

Week 2 session 2 recording

Schedule

Three-dimensional arrays

Arrays in 3D
Images in 3D
Reshaping and three dimensions
Anatomical exercise
If you have time: Arteries exercise

For homework

See the page for session 1